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Spatial transcriptomic study reveals reproducible cell organization in gastruloids, highlighting robust spatial gene regulation during embryonic modeling.
This repository includes all the processed data, processing scripts to generate the processed data, annotations, and notebooks used to generate the plots found in "Single-cell spatial mapping reveals reproducible cell type organization and spatially-dependent gene expression in gastruloids". Raw seqFISH data used to generate the cell by gene tables in this repository can be found in the BioImage Archive (accession number S-BIAD3844).
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Triandafillou et al. (2026) studied this question.
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