Machado-Joseph disease (MJD) is an inherited neurodegenerative disorder with an autosomal dominant inheritance. The brain regions affected by MJD include the Clarke column and spinocerebellar tracts, pons, dentate nuclei, substantia nigra, anterior horn cells, red nuclei, and peripheral nerves, but MJD is distinguished from other inherited cerebellar ataxias because it spares the olives and cerebellar cortex. The established phenotypes of MJD include gait and limb ataxia, ophthalmoplegia, dystonia, amyotrophy, dysarthria, rigidity, pyramidal signs, facial and lingual fasciculations, and bulging eyes (the most characteristic feature).In 1977 Romanul proposed the existence of a new disease entity based on apparent common clinical symptoms in four family pedigrees, including the Machado family and Joseph family (Nakano et al., 1972; Rosenberg et al., 1976). Since these pedigrees were all of Portuguese Azorean origin, the new disease was referred to as “Azorean disease” at the time (Romanul et al., 1997; Nakamoto et al., 1998). Later, the existence of several families with similar clinicopathological phenotypes of non-Azorean origin was reported, and therefore this disease has come to be more preferably known as Machado-Joseph disease (Healton et al., 1980; Lima and Coutinho, 1980; Sakai et al., 1983; Suite et al., 1986; Yuasa et al., 1986; Takiyama et al., 1989).In 1993, a linkage study of large Japanese pedigrees identified the MJD locus on a distal region of the long arm of chromosome 14 (Takiyama et al., 1993). Almost simultaneously, a locus covering a similar region on chromosome 14 was reported as the thirdly identified locus of spinocerebellar ataxia (Stevanin et al., 1994). In this review, we introduce our long-term studies of MJD, covering the identification of MJD1 (the gene responsible for MJD) to the recent molecular analysis of MJD, and from the data obtained from MJD analyses, we discuss the potential general molecular mechanisms that underlie a broad spectrum of neurodegenerative disorders, if not all of them.Neurodegenerative disorders have a considerable range of signs and symptoms: dementia, ataxia, movement disorders, and so forth. However, from a more general point of view, they share several common features, e.g., the inheritances that result in these disorders are usually autosomal dominant, in many cases disease symptoms appear after middle age, and these symptoms progress after appearing. The most prominent pathology is neuronal cell loss and degeneration, although each disorder has its own regions of the central nervous system that are susceptible. Furthermore, for several inherited diseases, such as Huntington’s disease (HD) and dentatorubral-pallidoluysian atrophy (DRPLA), clinical symptoms worsen and the age of onset becomes earlier in each succeeding generation. This phenomenon is called “anticipation.” These features suggest that common mechanisms underlie these inherited neurodegenerative disorders, but the real molecular bases of these mechanisms have long remained unknown.In retrospect, the first breakthrough was made in 1991 by La Spada et al. (1991). They reported the androgen receptor (AR) gene as the gene responsible for spinobulbar muscular atrophy (SBMA), an X-linked recessive neurodegenerative disorder. The gene responsible for HD, the most typical autosomal dominant neurodegenerative disease, was identified in 1993 (The Huntington’s Disease Collaborative Research Group, 1993). Both disorders have totally different symptoms, inheritances, and chromosomal loci (on chromosomes X and 4 in SBMA and HD, respectively), and they both are caused by genes encoding nonhomologous proteins. However, patient-related mutations were expansions (more than 40 repeats) of polyglutamine (polyQ)-coding CAG repeats. The polyglutamines were located near the N-terminal portion in the resulting proteins. Surprisingly, in both diseases, patients with longer expansions appeared to have more severe clinical symptoms and to manifest an earlier disease onset. Even more surprisingly, the highly expanded CAG repeats in HD appeared to be unstably transmitted to succeeding generations, with a tendency toward further elongation, typically in paternal transmission (Duyao et al., 1993). This observation provided a simple but convincing molecular basis of anticipation. Thus, suddenly the possibility was raised that expansions of CAG repeats or other triplet repeats are also responsible for other inherited neurodegenerative disorders, especially those with anticipation.On the assumption that several other inherited neurodegenerative disorders are also caused by CAG triplet expansions in yet unknown genes, we first searched for novel CAG-containing genes that are expressed in the human brain. Using an oligonucleotide with a (CTG)13 repeat as a probe, which we expected to hybridize strongly to CAG repeats and weakly to CGG repeats, we screened a human brain cDNA library. We succeeded in isolating about 30 clones containing CAG repeats, but not CGG repeats (Kawaguchi et al., 1994). One of them consisted of 1,776 bp with a long open reading frame encoding a soluble cytoplasmic protein with an amino acid length of 360 (Kawaguchi et al., 1994) (Fig. 1A). The CAG repeat was predicted to be translated into a glutamine tract, as observed in SBMA and HD, but, instead, was located near the C-terminal portion. Northern blot analysis revealed that transcripts were faintly detectable in all of the tissues examined, with the exception of testis, in which strong expression was observed. Reverse transcriptase–polymerase chain reaction (RT-PCR) analysis of human brain mRNA demonstrated expression of both alleles with different lengths of CAG repeats, suggesting that each allele had lengths of CAG repeats that were polymorphic in nature. In addition, the originally identified stop codon was later found to be polymorphically changed to a tyrosine-coding TAC in about 60% of the alleles in Japanese (Fig. 1B) (Goto et al., 1997). A splice variant with a different C-terminal end (Fig. 1B) was also identified (Nakamoto et al., 1998).Despite our success with RT-PCR, we were unable to amplify genomic fragments containing the CAG repeats by PCR using any PCR primers that were constructed from the coding sequence. We assumed the presence of an intron close to the CAG repeat and thus screened a human genomic library to isolate the corresponding genomic clones; in the process, we obtained four related genomic fragments. We gave the symbol MJD1 to the gene corresponding to the cDNA and the symbols MJD2, MJD3, and MJD4 to the other three putatively related genes (Kawaguchi et al., 1994). MJD1 and the other three genomic fragments were mapped at 14q32.1, 8q23, 14q21, and Xp22.1, respectively (Kawaguchi et al., 1994). The physiological functions of MJD1 remain to be clarified. However, MJD1 has two ubiquitin-interacting motifs in the N-terminal side of polyQ and carries another motif, named “Josephin,” at the N-terminus (Fig. 1C). A recent report shows that MJD1 is able to bind to HHR23A and HHR23B (the human homologs of the yeast DNA repair protein RAD23) through their ubiquitin-like (UBL) domains (Wang et al., 2000).As predicted, we identified an intron just upstream of the CAG repeat in MJD1. This intron sequence allowed us to amplify by PCR the MJD1 genomic sequence surrounding the CAG repeat. Then, we compared the CAG repeat numbers in MJD1 of healthy individuals with those of clinically diagnosed MJD patients (Fig. 2A) (Kawaguchi et al., 1994). Consistent with our RT-PCR analysis on human brain mRNA, CAG repeat numbers in MJD1 were found to be polymorphic in healthy individuals, from 13 to 36 repeats. The most frequent allele was found to contain 14 repeats, representing about 30% of the total, followed by those with 27, 28, and 21 repeats, representing approximately 15% each. In contrast, MJD patients were found to have longer CAG repeats, from 62 to 84 repeats, and a clear reverse correlation was observed between the repeat numbers and the age of disease onset (Fig. 2B). One repeat elongation was estimated to accelerate onset by approximately 2.6 yr. A recent report shows that rare intermediate repeat lengths, such as 53 and 54 repeats, are also pathogenic (van Alfen et al., 2001). In patients with CAG expansions in both MJD1 genes, onset occurred much earlier than predicted from the repeat numbers, indicating a gene-dosage effect.At almost the same time, an additional two inherited neurodegenerative diseases, spinocerebellar ataxia type 1 (SCA1) and DRPLA, were found to be caused by the expansion of CAG repeats in different responsible genes (Banfi et al., 1993; Koide et al., 1994; Nagafuchi et al., 1994). It was predicted that all of the CAG repeats that had been identified as causing these five inherited neurodegenerations by expansion were transcribed and translated into polyQ stretches as portions of apparent intracellular proteins. Thus, the simplest and easiest idea to test was that expanded polyQ (ex-polyQ) itself plays a toxic function that is causally related to the neurodegeneration.To test this idea, expression vectors for MJD cDNAs with various CAG repeat lengths were transfected in cultured COS7 cells and neuronal PC12 cells, and their phenotypes were (Fig. et al., et al., of these were expressed with a in their were observed by the expression of MJD with and and lengths of were they observed in a C-terminal portion of the MJD protein with a polyQ length cell was the C-terminal portion with and an itself were expressed (Fig. et al., analysis using an that and had suggesting that they in the cells (Fig. et al., In cells with such and of related to observed. 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The protein with a strong at the and with the region of the receptor at the is expressed with a which the expression of a in this for this system in the the MJD in this is by its the portion with to the and the resulting in in PC12 The cells obtained from this system contain PC12 with of the MJD this process, cells with much for the MJD protein be We which a length of polyglutamine repeats in the process, to of the fragments and cell We were able to several PC12 after with and these two and were by and were to have MJD (Fig. et al., 2001). 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Thus, our that in the the of is for into the (Fig. et al., et al., et al., In a et al., was found to more in cells than in cells or These that the of is an in the system and that its severe to and cell neurodegenerative disorders manifest phenotypes movement disorders, and and thus it was to a common molecular if not neurodegenerative However, neurodegenerative disorders share several common such as autosomal dominant and neuronal cell loss and in the affected regions of the central nervous These suggest the existence of similar molecular and neuronal cell many in this have this idea, and a yet unknown toxic has been assumed to be in which typically be observed in inherited with an autosomal dominant of we identified the gene responsible for MJD (Kawaguchi et al., as a this disease has been found to be the most common inherited spinocerebellar ataxia the of Since we have molecular analysis of MJD, to potential common molecular mechanisms MJD but also another inherited neurodegenerative HD, DRPLA, have been to be caused by the expansion of CAG repeats that polyglutamines 1998). we have that polyglutamines have the to and and cell in and and cultured cells, to the of a disease” et al., et al., et al., These of polyglutamines those of and which respectively disease, disease, and Thus, the of is most to be a toxic of function in Then, after the of such have identified a of the not as a protein but also as a cell with our of polyglutamine disease et al., et al., not with polyglutamine but also other protein and which are neuronal typically found in disease and a type of et al., 2001). in its are found to to expansion and cell phenotypes observed in many neurodegenerative et al., These of that functions not as a common for protein but also as a of neurodegenerative of in several neurodegenerative disorders, to is known to function in the in which its is for from the and et al., et al., Even in an approximately to the expression of of such as to of that are most in the and et al., Since functions as a different be in containing from to which in of Furthermore, the of expression of the of in the cells be expected to in to the of recent the of has been to in several of neurodegenerative disorders, including polyglutamine et al., et al., studies have that of by to phenotypes those observed in cells or those observed and of several neurodegenerative disorders et al., 2001). 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