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September 12, 2026Journal of the American Society for Mass SpectrometryOpen Access

A Flexible, Automated Workflow for Collision Cross Section Calculations Utilizing MobCal-MPI

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Authors

JHJoseph HaunDKDylan KochCRChristopher R. M. Ryan

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Overview

Computational study demonstrates accurate collision cross section prediction across diverse small molecules, indicating streamlined ion mobility-based structural annotation.

Key Points

  • Develop and validate MobCal-MPI-X, an automated pipeline to predict low-field collision cross sections and high-field mobility from minimal user structural input.
  • Automated the sequential identification of lowest-energy charge sites, conformational ensemble generation, density functional theory refinement, and trajectory-method mobility simulations.
  • Benchmarked the workflow against three independent experimental datasets of environmental contaminants, pharmaceuticals, and forensic analytes measured via APCI and (-)ESI.
  • Yielded a mean absolute error of 2.0% for positive ions and 3.3% for negative ions in low-field collision cross section predictions using Boltzmann-averaged conformers.
  • Successfully matched experimental high-field mobility trends and alpha-function curve profiles across diverse chemical classes.

Cite This Study

Haun et al. (2026) studied this question.

synapsesocial.com/papers/6aa51f60327956e4761f9b15https://doi.org/10.1021/jasms.6c00245
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