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September 12, 2026Microbiology ResearchOpen Access

Gut Microbiome Composition of Wild and Captive Black Capuchin Monkeys (Sapajus nigritus)

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Authors

TGTiela Trapp GrassottiCJCécile JacryMCManuela Gamarra Cassol

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Overview

Comparative study reveals distinct gut microbiome structures and metabolic pathways between wild and captive black capuchin monkeys, indicating strong environmental influences on host microbiota.

Key Points

  • To compare the gut microbial diversity, taxonomic composition, and predicted functional potential between wild and captive populations of black capuchin monkeys (Sapajus nigritus).
  • Profiled the gut microbiomes of wild and captive black capuchin monkeys from southern Brazil using 16S rRNA gene sequencing.
  • Evaluated microbial diversity, community structure, differential taxonomic abundance, and predicted functional pathways using PERMANOVA, DESeq2, Random Forest classifiers, and PICRUSt2.
  • Host environment was significantly associated with gut bacterial community composition (PERMANOVA, p = 0.004), with captive individuals exhibiting greater overall microbial richness.
  • Wild monkeys were enriched in Pseudomonadota (notably Enterobacteriaceae and Morganellaceae), while captive monkeys displayed higher abundances of Bacteroidota (notably Bacteroidaceae and Dysgonomonadaceae), achieving a Random Forest classification AUC of 0.934.
  • Predicted functional profiling showed enrichment of amino acid biosynthesis, fatty acid β-oxidation, and mucin degradation in wild monkeys, whereas captive monkeys were enriched in pathways for aromatic and xenobiotic compound degradation.

Cite This Study

Grassotti et al. (2026) studied this question.

synapsesocial.com/papers/6aa51f60327956e4761f9bcdhttps://doi.org/10.3390/microbiolres17090175
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