Mutascope: sensitive detection of somatic mutations from deep amplicon sequencing

SUMMARY: We present Mutascope, a sequencing analysis pipeline specifically developed for the identification of somatic variants present at low-allelic fraction from high-throughput sequencing of amplicons from matched tumor-normal specimen. Using datasets reproducing tumor genetic heterogeneity, we demonstrate that Mutascope has a higher sensitivity and generates fewer false-positive calls than tools designed for shotgun sequencing or diploid genomes. AVAILABILITY: Freely available on the web at http://sourceforge.net/projects/mutascope/. CONTACT: oharismendy@ucsd.edu SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.