We report the 4.1-Mb complete genome sequence of a novel member from the class Phycisphaerae (Phycisphaerae bacterium strain 2_2a_38c) of the phylum Planctomycetota, which was sequenced from a co-culture with Nocardioides sp. strain 2_2a_38e, originated from the forest soil in Hiroshima, Japan.
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