MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments

Key Points

• To provide a comprehensive R package for the statistical analysis of quantitative mass spectrometry proteomic experiments.
• The package is available as open-source under the Artistic-2.0 license.
• It can be downloaded from www.msstats.org or Bioconductor.
• Users can access it via command line in R or through a graphical interface in Skyline.
• The package simplifies the analysis workflow for proteomic experiments.
• It provides tools for both command line and GUI usage, making it versatile for different user preferences.