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To provide a comprehensive R package for the statistical analysis of quantitative mass spectrometry proteomic experiments.

MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments

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To provide a comprehensive R package for the statistical analysis of quantitative mass spectrometry proteomic experiments.
The package is available as open-source under the Artistic-2.0 license.
It can be downloaded from www.msstats.org or Bioconductor.
Users can access it via command line in R or through a graphical interface in Skyline.
The package simplifies the analysis workflow for proteomic experiments.
It provides tools for both command line and GUI usage, making it versatile for different user preferences.

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Open-source R package analyzes quantitative mass spectrometry data, facilitating proteomic research workflows.

Choi et al. (2014) studied this question.

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