October 15, 2012Open Access

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

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Abstract

We present SortMeRNA, a new software designed to rapidly filter rRNA fragments from metatranscriptomic data. It is capable of handling large sets of reads and sorting out all fragments matching to the rRNA database with high sensitivity and low running time.

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Authors

Evguenia Kopylova

Laurent Noé

Hélène Touzet

Journals

Bioinformatics

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Institutions

Centre National de la Recherche Scientifique

Centre de recherche Inria Lille - Nord Europe

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SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

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Abstract

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