Abstract Background Immune checkpoints critically regulate T-cell activation and tolerance, yet their role in mucosal immune dysregulation in ulcerative colitis (UC) remains poorly defined. While expansion of regulatory T cells (Treg) in active UC is well-documented, how checkpoints and activation markers shape local T-cell phenotypes remains unclear. Indeed, the paradoxical co-expression of activation and exhaustion markers suggests a complex immune state that may underlie ineffective regulation or persistent inflammation. Characterizing these tissue-specific signatures could reveal biomarkers of disease activity and novel therapeutic targets. Methods Paired blood and intestinal samples were collected from patients with endoscopically active UC (aUC, n = 8), quiescent UC (qUC, n = 5), and non-IBD controls (n = 6). Peripheral blood mononuclear cells (PBMCs) were isolated by ficoll gradient, and lamina propria mononuclear cells (LPMCs) by enzymatic digestion. High-dimensional spectral flow cytometry profiled T-cell subsets and assessed expression of activation (HLA-DR, CD25, CD69) and checkpoint markers (PD-1, CTLA-4, TIGIT, LAG-3, VISTA). Statistical comparisons used Kruskal–Wallis tests with p 0.05 considered significant. Results We uncovered a compartmentalized immune response unique to aUC. In blood, patients showed depletion of memory T cells, Th17, and Treg subsets that were expanded in the inflamed mucosa, consistent with active migration. The mucosal compartment also exhibited a striking enrichment of a PD-1+TIGIT+HLA-DR+CD25+ T-cell subset, completely absent in their circulating precursors or in the blood or mucosa from controls or qUC patients. These cells represented activated/exhausted phenotypes across tissue-resident memory CD8+, effector memory, and pathogenic Th17 subsets. Their expression of both activation markers (HLA-DR, CD25) and inhibitory checkpoints (PD-1, TIGIT) suggest sustained antigenic stimulation and functional exhaustion. The restriction of this population to inflamed tissue indicates local induction by the inflammatory microenvironment and its disappearance during remission highlights a reversible, inflammation-dependent process. Whether these cells represent a failed regulatory mechanism or active drivers of pathology remains to be determined. Conclusion We hereby have identified a unique PD-1+TIGIT+HLA-DR+CD25+ T-cell subset enriched in the inflamed mucosa from aUC but largely absent in remission and controls. This subset may serve as a biomarker of active disease, reflect local immune induction, and illustrate the coexistence of activation and exhaustion that characterizes chronic intestinal inflammation. Conflict of interest: Dr. Romero Castillo, Laura: No conflict of interest Esteva Fernández, Andrea: No conflict of interest López Pascual, Francisco Javier: I declare that I have no conflicts of interest De Prado Santos, Ángel: No conflict of interest. Arribas Rodríguez, Elisa: I have no conflict of interest Garcia Alonso, Francisco Javier: I have acted as a speaker for Abbvie, Lilly and Johnson and Johnson De Andrés-Asenjo, Beatriz: I have no conflict of interest Godoy Martínez, Lucía: I do not have conflict of interest. Velayos, Benito: No Izquierdo, Sandra: None. Romero, Alejandro: No conflicts Alcaide Suárez, Noelia: No conflicts Cuesta-Sancho, Sara: I have no conflicts of interest to declare Escudero-Hernández, Celia: Grant: ECCO grant, ECCO fellowship Other: ECCO young researcher award 2025, UEG J junior editor Barrio Andres, Jesus: Jesús Barrio has served as a speaker, as consultant or has received research or education funding Abbvie, Takeda,Kern Pharma and Ferring. Fernández-Salazar, Luis: My institution has been granted by Johnosn & Johnson for investigation. I have been financed to attend IBD meetings by Ferring, Lilly and Sandoz. Bernardo, David: David Bernardo has received funding from Pfizer (to develop research projects) as well as from Janssen and Takeda (consulting)
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