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February 16, 2026Scientific Data0 citationsOpen Access

Chromosome-scale genome of the burrowing sea anemone Paracondylactis sinensis

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JLJunyuan LiRTRongye TangJFJuan Feng

Key Points

  • To provide a comprehensive genomic resource for Paracondylactis sinensis, focusing on its environmental adaptations.
  • Generated a chromosome-level genome assembly using PacBio HiFi long reads, Illumina short reads, and Hi-C data.
  • Conducted BUSCO analysis to assess genome completeness and quality.
  • Annotated protein-coding genes and identified repetitive elements.
  • Evaluated transposable elements within the genome.
  • Produced a 210.63 Mb genome with 93.44% anchored to 19 pseudo-chromosomes.
  • Achieved 95.91% completeness in BUSCO analysis, confirming high assembly quality.
  • Identified 19,420 protein-coding genes, with 91.35% functionally annotated.
  • Repetitive elements accounted for 26.43% of the genome, with transposable elements at 20.47%.

Abstract

Paracondylactis sinensis is a burrowing sea anemone inhabiting soft sediments along the Chinese coast, representing an ecologically and economically important actiniarian species. Despite its unique adaptations to hypoxia and sediment-associated stressors, genomic resources for burrowing sea anemones have been lacking. Here, we report a high-quality, chromosome-level genome assembly of P. sinensis . With PacBio HiFi long reads (39.77 × coverage), Illumina short reads, and Hi-C data, a 210.63 Mb genome with a contig N50 of 8.70 Mb and a scaffold N50 of 9.41 Mb was generated. A total of 93.44% of the assembly was anchored to 19 pseudo-chromosomes. BUSCO analysis indicated 95.91% completeness, confirming high assembly quality. Comprehensive annotation identified 19,420 protein-coding genes, of which 91.35% were functionally annotated. Repetitive elements accounted for 26.43% of the genome, with transposable elements representing 20.47%. This genome provides a crucial reference for understanding the genetic basis of environmental adaptation in P. sinensis and supports future efforts in its conservation, aquaculture, and bioactive compound exploration.

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Cite This Study

Li et al. (2026) studied this question.

synapsesocial.com/papers/69926a620d0ce0adc9976a36https://doi.org/10.1038/s41597-026-06838-8
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