Despite the success of Geometric Graph Neural Networks (GGNNs), their reliance on local message passing inherently limits the receptive field, leading to the over-squashing of distant information. Current solutions—ranging from graph rewiring to global attention—address this as a purely topological bottleneck, often neglecting the explicit electronic degrees of freedom (e.g., charge transfer and electrostatics) that physically govern long-range couplings. To resolve this disconnect, we propose HMP-Net, a framework that integrates over-squashing remedies with chemically meaningful interaction channels. Our approach introduces a differentiable hierarchy that routes information through learned “master nodes”, enabling direct global reasoning while preserving local chemical fidelity. Crucially, we clarify the theoretical ambiguity between topological and physical long-range interactions, establishing practical boundaries for when explicit physical modeling suffices and when architectural interventions are strictly necessary to capture global electronic states.
Sun et al. (Mon,) studied this question.
Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context: