Deciphering Metazoan Community Dynamics Using eDNA in a Human-Impacted Gulf Ecosystem: Spatiotemporal Patterns and Environmental Drivers

Coastal ecosystems, particularly semi-enclosed gulfs, are increasing anthropogenic pressures from urbanization and industrialization with profound impacts on biodiversity maintenance, energy transfer, and biogeochemical cycling. However, how metazoan communities—key components of marine food webs—respond to spatiotemporal variability and human disturbance remains insufficiently understood. This study applied eDNA metabarcoding targeting the mitochondrial COI gene to investigate metazoan communities across 68 stations in the Beibu Gulf, spanning bay, coastal, and island regions, during wet and dry seasons. In total, 878 metazoan ASVs from 13 phyla were detected. Arthropoda dominated both seasons (wet: 85%; dry: 55%), whereas Chordata increased during the dry season (wet: 0.16%; dry: 37%). At the α-diversity level, diversity peaked in the bay region during the dry season and shifted toward the coastal region during the wet season. At the β-diversity level, community composition differed significantly between seasons and spatial regions, with seasonal variation exerting a stronger influence than spatial differentiation. Co-occurrence networks revealed higher complexity during the dry season. β-diversity was overwhelmingly driven by species turnover (94.4%). The island region exhibited the highest community uniqueness, while the human-impacted bay region showed reduced distinctiveness. Redundancy analysis further identified anthropogenically influenced inorganic nitrogen, together with water temperature, transparency, and salinity, as key environmental drivers shaping community structure. βNTI analysis indicated that community assembly was governed by the combined effects of deterministic and stochastic processes. Overall, this study highlights how environmental gradients and human pressures jointly regulate metazoan dynamics, providing insights for biodiversity conservation in human-impacted coastal seas.