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May 7, 2026Epidemiology and Infection0 citationsOpen Access

Interregional outbreak of Salmonella Typhimurium linked to fresh cheese: A case-case study guided by whole genome sequencing (WGS), Portugal, March-June 2024

SSSebastian von SchreebLSLeonor SilveiraÂPÂngela Pista

Key Points

  • The study aimed to identify the source of a Salmonella Typhimurium outbreak using whole genome sequencing and a case-case design.
  • Conducted a case-case study comparing outbreak cases with historical salmonellosis cases.
  • Performed whole genome sequencing on 58 Salmonella isolates from the outbreak period.
  • Calculated odds ratios for food exposures using logistic regression based on surveillance data.
  • Cluster cases had a significantly higher odds ratio of 18 for fresh cheese consumption compared to historical cases.
  • Environmental and product tests from the cheese production site tested negative for Salmonella spp.
  • The findings support fresh cheese as the most likely transmission vehicle for this outbreak.

Abstract

In 2024, an outbreak of Salmonella Typhimurium affected two regions in Portugal. To identify the vehicle, we conducted a case-case study using a 'same disease, different time period' design. We compared S. Typhimurium cases linked by WGS (cluster cases) with salmonellosis cases notified in 2023 (historical cases) and calculated odds ratios for food exposures in surveillance data using logistic regression. We performed WGS on 58 isolates from the outbreak period (11/03/2024-18/06/2024), and all belonged to a single cgMLST cluster (HierCC HC5₄10410). Compared with the 552 historical cases, cluster cases more frequently reported fresh cheese consumption (OR 18;. We visited the implicated cheese production site, identified food safety non-conformities and enforced hygiene measures. Environmental and product specimens collected at the visit tested negative for Salmonella spp. Taken together, the most plausible vehicle in this outbreak was fresh cheese. The case-case design enabled a rapid, low-cost analysis using surveillance data. Using WGS cluster cases as the case definition, rather than all S. Typhimurium cases, yielded a higher OR in the case-case study, increasing confidence in the findings. We recommend this combined approach as part of the toolkit for foodborne outbreak investigations in Portugal and similar contexts.

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Cite This Study

Schreeb et al. (2026) studied this question.

synapsesocial.com/papers/69fc2ba98b49bacb8b347a5ahttps://doi.org/10.1017/s0950268826101538
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