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July 1, 1980Proceedings of the National Academy of Sciences180 citationsOpen Access

The tetramer d(CpGpCpG) crystallizes as a left-handed double helix.

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JCJames L. CrawfordFKFrancis J. KolpakAWA H Wang

Key Points

  • Determine the three-dimensional crystal structure of the synthetic DNA tetramer d(CpGpCpG) in the presence and absence of spermine cations.
  • Solved the molecular structure of d(CpGpCpG) using X-ray crystal analysis in two distinct hexagonal unit-cell crystal forms (with and without spermine cations).
  • The d(CpGpCpG) molecules crystallize into a left-handed Z-DNA double helix that stacks end-to-end to form a virtually continuous helix missing every fourth phosphate group.
  • Base stacking remains similar to the hexamer d(CpGpCpGpCpG), but base pairs show a slightly shifted orientation with cytosine residues located further from the molecular axis in both crystal forms.

Abstract

The structure of the tetramer d(CpGpCpG) has been solved by x-ray analysis in two different crystal forms with and without spermine cations. The molecules crystallize in hexagonal unit cells and they form a left-handed double helix of Z-DNA similar to that previously reported for the hexamer d(CpGpCpGpCpG). In the crystal lattice the molecules stack together to form a virtually continuous left-handed double helix in which every fourth phosphate group is missing. The stacking of bases upon each other is similar to that seen in the hexamer. However, the base pairs have a slightly different orientation in that the cytosine residues are slightly removed from the axis of the molecule compared to the position they occupy in the hexamer. The structures are similar in two crystal forms with and without spermine cations.

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Cite This Study

Crawford et al. (1980) studied this question.

synapsesocial.com/papers/6a1c79392cc291e7bf2fd5eahttps://doi.org/10.1073/pnas.77.7.4016
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