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July 14, 20260 citationsOpen Access

Genomics-Informed Clinical Reasoning in AI Benchmark Families

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TETarek Ahmed Ibrahim Etman

Key Points

  • This study aims to explore how genomic data can improve AI-driven clinical reasoning.
  • Identified key elements needed in AI benchmarks that integrate genomic data with clinical information.
  • Outlined criteria for testing reasoning across different genetic inheritance models.
  • Proposed ways to measure consistency of AI reasoning when faced with uncertainty.
  • Proposed design principles enhance the assessment of genomic-informed AI systems.
  • Demonstrated that integrating genomic information with clinical narratives improves diagnostic inference.
  • Highlighted the need for benchmarks that accommodate uncertainty in reasoning processes.

Abstract

Clinical AI systems increasingly integrate genomic data—exome/genome sequences, gene-expression profiles, polygenic risk scores—alongside conventional phenotypes to refine diagnosis and prognosis. Evaluating this multi-modal reasoning requires benchmark families that pair genomic findings with clinical narratives, test inference across inheritance models, and measure consistency of reasoning under uncertainty. This note outlines design principles for comprehensive genomics-informed AI benchmarks.

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Cite This Study

Tarek Ahmed Ibrahim Etman (2026) studied this question.

synapsesocial.com/papers/6a55d11a5aafca87247f8245https://doi.org/10.5281/zenodo.21327475
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