OpenBiome

Recent papers from OpenBiome

1. Fecal microbiome transplant in food allergy in humans and mice identifies a role for bile acid metabolites in oral toleranceScience Translational Medicine · 2026
2. Tool-Entropy Collapse: A Cross-Architecture Signature of Agent WANDERING Failure2026
3. Mapping the avoid-ome: a systematic open-science approach to predictive ADMETNature Communications · 2026
4. 1ST PLACE, ORIGINAL RESEARCH TRACK: CUPNavigator: A multi-model CDSS for tumor origin prediction, diagnostic planning, and therapy recommendations in cancer of unknown primarySTEM Fellowship Journal · 2026
5. Keratin degradation reflects a starvation survival strategy in Fervidobacterium islandicum AW-12025
6. Molecular dynamics and machine learning unlock possibilities in beauty design—A perspectiveAIP Advances · 2025
7. Thermal and thermo-oxidative accelerated aging of fluorosilicone rubberPolymer Degradation and Stability · 2024
8. OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalizationNature Methods · 2024
9. Single cell transcriptomics unveiled that early life BDE-99 exposure reprogrammed the gut-liver axis to promote a pro-inflammatory metabolic signature in male mice at late adulthoodToxicological Sciences · 2024
10. Transmission of the Potential Pathogen Atypical Enteropathogenic Escherichia coli by Fecal Microbiota TransplantGastroenterology · 2023
11. Growth of Escherichia coli K-12 on L-proline in the absence of known proline transportersJournal of Advances in Microbiology Research · 2023
12. Effectiveness and Safety of Fecal Microbiota Transplantation for Clostridioides Difficile Infection: Results From a 5344-Patient Cohort StudyGastroenterology · 2022
13. Pilot study of autologous fecal microbiota transplants in nursing home residents: Feasibility and safetyContemporary Clinical Trials Communications · 2022
14. Species-Level Resolution of Female Bladder Microbiota from 16S rRNA Amplicon SequencingmSystems · 2021
15. Daily, oral FMT for long-term maintenance therapy in ulcerative colitis: results of a single-center, prospective, randomized pilot studyBMC Gastroenterology · 2021
16. Stool Banking for Fecal Microbiota Transplantation: Methods and Operations at a Large Stool BankFrontiers in Cellular and Infection Microbiology · 2021
17. 16S rRNA sequencing of samples from universal stool bank donorsBMC Research Notes · 2021
18. Fecal microbiota transplantation in HIV: A pilot placebo-controlled studyNature Communications · 2021
19. lnc‐RHL, a novel long non‐coding RNA required for the differentiation of hepatocytes from human bipotent progenitor cellsCell Proliferation · 2021
20. Altered brain structural connectivity in patients with longstanding gut inflammation is correlated with psychological symptoms and disease durationNeuroImage Clinical · 2021