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September 10, 2025Open Access

Two Apache Jena SPARQL query performance observations

Key Points

Searches using SPARQL often reveal issues in RDF stores, emphasizing the importance of performance observations.
This work includes examples such as identifying non-numeric PubMed identifiers, highlighting a practical application.
Combining SPARQL queries with Java code enhances query efficiency and content issue resolution in WikiPathways.
The research explores performance in semantic web contexts, indicating broader implications for RDF usage.

Abstract

Doing searches in RDF stores is commonly done with SPARQL queries. I have been using this with the semantic web translation of WikiPathways by Andra to find common content issues, though sometimes combined with some additional Java code. For example, find PubMed identifiers that are not numbers.

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Egon Willighagen (Sat,) studied this question.

synapsesocial.com/papers/68c1e17054b1d3bfb60fe9d9 https://doi.org/https://doi.org/10.59350/nwnd6-hj737

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