Characterization of the Hemagglutinin Gene of Morbillivirus Canis in Domestic Dogs from the Mid-Western Area of Brazil

Canine distemper virus (CDV) is a serious and often fatal disease caused by Morbillivirus canis, which affects domestic dogs and wild carnivores, with case-fatality rates reaching up to 47%. The hemagglutinin (H) protein mediates viral adsorption and shows high genetic variability, making it a valuable molecular marker. This study aimed to detect and characterize the H gene of CDV strains from 14 dogs with fatal neurological disease in the Brazilian states of Mato Grosso and Rondônia. Brain tissue was tested via RT-PCR for the nucleocapsid gene, and positive samples were amplified for the H gene. Ten complete H-gene sequences were obtained. Phylogenetic analysis revealed two distinct clusters within the South America I/Europe lineage: one related to strains from Uruguay and Argentina (with residues 530G/549Y) and another related to Brazilian strains (530S/549Y). One sequence (MT8) showed an intermediate position in the haplotype network but clustered phylogenetically with Uruguay/Argentina-related strains. Most sequences carried 530S/549Y, a pattern linked to altered SLAM receptor usage in wildlife. These findings demonstrate the co-circulation of two CDV clusters in Central–Western Brazil, their regional and international genetic connectivity, and amino acid substitutions potentially influencing host adaptation and antigenicity.