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July 23, 2024Peer Community In Mathematical and Computational BiologyOpen Access

An accelerated Vidjil algorithm: up to 30X faster identification of V(D)J recombinations via spaced seeds and Aho-Corasick pattern matching

Giulio Ermanno Pibiri

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Abstract

A recommendation of: Cyprien Borée, Mathieu Giraud, Mikaël Salson Alignment-free detection and seed-based identification of multi-loci V(D)J recombinations in Vidjil-algo https://hal.science/hal-04361907

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Cite This Study

Giulio Ermanno Pibiri (2024) studied this question.

synapsesocial.com/papers/68e5f62bb6db64358758a6ae https://doi.org/10.24072/pci.mcb.100268

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Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context:

1Alignment-free detection and seed-based identification of multi-loci V(D)J recombinations in Vidjil-algo2025 · 1 citations
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3Method for the Unification and Reduction of the Search Space of V Gene Segments in Sequence Alignments2025
4Scalable neighbour search and alignment with uvaia2024 · 1 citations
5VDJdb in 2026: boosting T-cell receptor recognition evidence using paratope embeddings and AI-based structure predictionOriginal Research · 2026

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