A bit catastrophe, loosely defined, is when a change in just one character of a string causes a significant change in the size of the compressed string. We study this phenomenon for the Burrows-Wheeler Transform (BWT), a string transform at the heart of several of the most popular compressors and aligners today. The parameter determining the size of the compressed data is the number of equal-letter runs of the BWT, commonly denoted r. We exhibit infinite families of strings in which insertion, deletion, resp. substitution of one character increases r from constant to Θ(log n), where n is the length of the string. These strings can be interpreted both as examples for an increase by a multiplicative or an additive Θ(log n)-factor. As regards multiplicative factor, they attain the upper bound given by Akagi, Funakoshi, and Inenaga [Inf & Comput. 2023] of O(log n log r), since here $r=O(1)$. We then give examples of strings in which insertion, deletion, resp. substitution of a character increases r by a Θ(√n) additive factor. These strings significantly improve the best known lower bound for an additive factor of Ω(log n) [Giuliani et al., SOFSEM 2021].
No takes yet. Share an insight, caveat, or question.
Giuliani et al. (2024) studied this question.
Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context: