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March 15, 2024Open Access

SegmentNT: annotating the genome at single-nucleotide resolution with DNA foundation models

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Authors

BABernardo P. de AlmeidaResearch Institute of Molecular PathologyHDHugo Dalla-TorreInstitut Supérieur d'Électronique de ParisGRGuillaume RichardInstitut Supérieur d'Électronique de Paris

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Almeida et al. (2024) studied this question.

synapsesocial.com/papers/68e73cb8b6db6435876b614ehttps://doi.org/10.1101/2024.03.14.584712
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Also Consider

Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context:

  1. 1Benchmarking DNA Foundation Models for Genomic Sequence Classification2024 · 14 citations
  2. 2DeepGene: An Efficient Foundation Model for Genomics based on Pan-genome Graph Transformer2024 · 5 citations
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  4. 4Benchmarking DNA Foundation Models for zero-shot variant effect prediction: the role of context, training, and architecture2025
  5. 5DeepGene: An Efficient Foundation Model for Genomics based on Pan-genome Graph Transformer.2025 · 3 citations