March 5, 2024Open Access

Chrom-pro: A User-Friendly Toolkit for De-novo Chromosome Assembly and Genomic Analysis

View Full Paper

Ask AI

Bookmark

Authors

WSWei SongCornell University TYTianrui YeUniversity of North Carolina at Chapel Hill SLShaobo LiuCentral South University

Discussion

Member takes

Implication

Software evaluation demonstrates automated de novo chromosome assembly across three species, highlighting high assembly completeness and collinearity.

Key Points

Chrom-pro achieved high-accuracy chromosome assembly with over 95% BUSCO completeness across public sequencing datasets from mango, plum, and pufferfish.
Assessment using publicly available sequencing data integrated second-generation sequencing, third-generation sequencing, and Hi-C reads into a unified pipeline.
The automated workflow may enable efficient chromosome assembly and downstream comparative genomic analysis, though broader multi-species testing remains needed.

Cite This Study

Song et al. (2024) studied this question.

synapsesocial.com/papers/68e75a06b6db6435876d1151 https://doi.org/10.1101/2024.03.02.583079

View Full Paper

Ask AI

Bookmark

Implication

Software evaluation demonstrates automated de novo chromosome assembly across three species, highlighting high assembly completeness and collinearity.

Chrom-pro: A User-Friendly Toolkit for De-novo Chromosome Assembly and Genomic Analysis

Discussion

Member takes

Implication

Key Points

Cite This Study

Chrom-pro: A User-Friendly Toolkit for De-novo Chromosome Assembly and Genomic Analysis

Discussion

Member takes

Implication

Key Points

Cite This Study

Also Consider

Also Consider