Gut microbes Bacteroides have several demonstrated beneficial properties to their host, such as the suppression of intestinal inflammation. Like many bacteria, Bacteroides have a polysaccharide capsule which is linked to their survival and can modulate these positive immune effects. However, the capsular polysaccharides (CPS) can also play a role in virulence. Here we present characterization of a novel putative polysaccharide deacetylase from Bacteroides ovatus (BoPDA), encoded in a likely CPS biosynthesis loci. We found that this enzyme is highly conserved in the majority of Bacteroides species. Sequence and structural analysis indicates BoPDA contains a NodB homology domain common to the carbohydrate esterase 4 (CE4) superfamily, attached to a flanking carbohydrate binding domain. Interestingly, CE4 family members typically have a His-His-Asp metal binding site that BoPDA lacks. We solved multiple high resolution crystal structures (1.4 Å – 1.8 Å) of the enzyme bound to divalent cations Ni2+, Co2+, Cu2+ or Zn2+ that reveal its metal binding strategy. BoPDA deacetylase activity assays show that its catalysis is specific to Zn2+ despite the metal binding promiscuity seen in the crystal structures. Our findings provide insight into a novel, conserved polysaccharide deacetylase that may play a role in Bacteroides CPS biosynthesis. Financial support for this research comes from Cottrell Scholar Award #28277 sponsored by Research Corporation for Science Advancement.
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McLaughlin et al. (2024) studied this question.
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