Evaluation of Agronomic Performance and Genetic Diversity in Indonesian Pigmented Rice Using SCoT (Start Codon Targeted) Markers

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Analysis demonstrates genetic diversity in 12 local rice genotypes in Indonesia, suggesting SCoT markers are effective for breeding programs.

A polymorphism level of 69% was observed among the evaluated rice genotypes, highlighting their genetic diversity.
The use of SCoT markers yielded Polymorphic Information Content (PIC) values ranging from 0.3610 to 0.4646, indicating good informativeness.
Statistical approaches, including cluster and diversity indices, were employed to analyze the relationships of agronomic and genetic traits.
Finding high genetic variability underscores the potential for using these markers in targeted breeding and diversity assessment.

Safitri et al. (2025) studied this question.

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Analysis demonstrates genetic diversity in 12 local rice genotypes in Indonesia, suggesting SCoT markers are effective for breeding programs.