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This post presents issues in biocuration and highlights software for encoding databases as ontologies.
This is the first of a two-part post about encoding databases as ontologies. In this post, I give a background on the problems in biocuration that led me to start encoding databases as ontologies, the software I have written to do it, and the repository I have created to store the resulting artifacts in a FAIR, open, and sustainable way.
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Charles Tapley Hoyt (2025) studied this question.
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