A genomic analysis of the hydrocarbon-oxidizing strain R. qingshengii F2-2 was conducted to characterize the genes responsible for plant growth stimulation and phytopathogen biocontrol. Understanding these mechanisms is vital for developing effective phytoremediation approaches. It was shown that the F2-2 genome consists of a 6.3 Mb chromosome and three plasmids, two of which are linear—pLP156 (155 kb) and pLP337 (337 kb)—and one circular—pCP209 (210 kb). The genes responsible for biosynthesis of phytohormones (auxins, gibberellins, cytokinins), phosphate solubilization, and production of siderophores and antibiotic-active compounds (chloramphenicol and pristinamycin IA) were identified in the strain chromosome. Orthologous genes encoding phenazine antibiotics were found in the linear plasmid pLP156. The phytostimulating properties of the strain, associated with auxin production (2–4 μg/mL); the ability to effectively colonize rapeseed, mustard, and tobacco plants; and protective action against Fusarium spp. under artificial phytopathogenic background conditions, were experimentally confirmed. Thus, the discovered properties of the R. qingshengii F2-2 strain indicate its potential for the phytoremediation of oil-contaminated soils.
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