Building directly on our March 18, 2026 preprints (Zenodo Records 19093596 and the “in Action” paper), this work presents a complete, reproducible simulation framework for QAES-driven stabilization of room-temperature phonon bubbles in DNA swarms. We integrate BQACO pathfinding, QI-MARL energy optimization, and the full QAES Fourier classification algorithm to achieve sustained phonon-photon coherence over 4–5 base pairs at 298 K. The framework includes exact mathematical models, clean pseudocode, benchmark results, a detailed experimental roadmap for kinesin-driven active-gel self-assembly, and discussion of Genesis Mission applications. This closes the loop from theory to verifiable bio-quantum sensors.
Venerable et al. (Wed,) studied this question.