Building directly on the foundational “Quantum DNA Swarms” (Zenodo Record 19093596), this research transitions from theoretical frameworks to operational execution. We present real-time simulations of phonon-photon mediated coherence within DNA-based swarm systems, utilizing a multi-layered computational approach: BQACO agents for pathfinding, QAES (Quantum-Acoustic Evolutionary Strategies) for harmonic vibrational analysis, and QI-MARL for global energy optimization. Key results include the successful modeling of Terahertz (THz) phonon bubbles and photon entanglement transfer within active-gel self-assembly environments at room temperature. We provide performance benchmarks demonstrating sustained quantum coherence over a 4–5 base-pair threshold, a critical requirement for functional bio-quantum sensors. This work includes open-source simulation protocols and experimental roadmaps—specifically focusing on DNA morphogen gradients and kinesin-driven Strand Displacement Cascades (DSD)—to bridge the gap between abstract theory and laboratory-validated quantum nano-networks.
Venerable et al. (Wed,) studied this question.