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March 22, 2026Nature Methods2 citationsOpen Access

LazySlide: accessible and interoperable whole-slide image analysis

YZYimin ZhengEAErnesto AbilaECEva Chrenková

Key Points

  • The aim is to develop an open-source tool for integrating and analyzing histopathological images within multimodal frameworks.
  • Developed an open-source Python package within the scverse ecosystem.
  • Utilized vision-language foundation models for improved image analysis.
  • Implemented features like tissue segmentation and cross-modal querying.
  • Ensured data interoperability by adhering to scverse data standards.
  • LazySlide effectively bridges histopathology with omics workflows.
  • Demonstrated high efficiency in whole-slide image analysis with minimal setup required.
  • Enabled zero-shot classification, enhancing versatility in data interpretation.

Abstract

Histopathological data are foundational in both biological research and clinical diagnostics but remain siloed from modern multimodal and single-cell frameworks. Here we introduce LazySlide, an open-source Python package built on the scverse ecosystem for efficient whole-slide image analysis and multimodal integration. By leveraging vision–language foundation models and adhering to scverse data standards, LazySlide bridges histopathology with omics workflows. It supports tissue and cell segmentation, feature extraction, cross-modal querying and zero-shot classification, with minimal setup. LazySlide combines scverse with foundation models to enable efficient whole-slide image analysis.

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Cite This Study

Zheng et al. (2026) studied this question.

synapsesocial.com/papers/69bf8692f665edcd009e8dffhttps://doi.org/10.1038/s41592-026-03044-7
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