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March 28, 2026Bioinformatics2 citationsOpen Access

GRNFormer: Accurate Gene Regulatory Network Inference Using Graph Transformer

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AHAkshata HegdeJCJianlin Cheng

Key Points

  • To develop and evaluate GRNFormer, a tool for accurately inferring gene regulatory networks.
  • Utilized a graph transformer model for network inference.
  • Evaluated the tool using benchmark datasets and performance metrics.
  • Made the tool accessible on GitHub for reproducibility.
  • Demonstrated improved accuracy in gene regulatory network predictions.
  • Achieved better performance compared to existing methods in benchmark comparisons.

Abstract

GRNFormer is available on GitHub (https://github.com/BioinfoMachineLearning/GRNformer); the version used in this work is archived on Zenodo (https://doi.org/10.5281/zenodo.18868395), with evaluation resources for reproducibility.

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Cite This Study

Hegde et al. (2026) studied this question.

synapsesocial.com/papers/69c772158bbfbc51511e25adhttps://doi.org/10.1093/bioinformatics/btag144
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