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March 29, 2026npj Systems Biology and Applications3 citationsOpen Access

From FAIR to CURE: guidelines for computational models of biological systems

HSHerbert M. SauroEAEran AgmonMBMichael L. Blinov

Key Points

  • The aim is to establish guidelines for computational models in biological systems that complement existing data management principles.
  • Proposed the CURE principles emphasizing credibility, understandability, reproducibility, and extensibility.
  • Discussed verification, validation, and uncertainty quantification.
  • Outlined recommended and baseline requirements for CURE aspects.
  • Highlighted the importance of automation in implementing guidelines.
  • CURE principles enhance the trustworthiness of computational models in biomedical applications.
  • Discouraged the misconception of models as mere data, advocating their unique characteristics.
  • Promoted alignment with Digital Twins and open science practices to strengthen model interoperability.

Abstract

Guidelines for managing scientific data have been established under the FAIR principles, requiring that data be Findable, Accessible, Interoperable, and Reusable. In many scientific disciplines, especially computational biology, both data and models are key to progress. For this reason, and recognizing that such models are a very special type of "data", we argue that computational models, especially mechanistic models prevalent in medicine, physiology and systems biology, deserve a complementary set of guidelines. We propose the CURE principles, emphasizing that models should be Credible, Understandable, Reproducible, and Extensible. We delve into each principle, discussing verification, validation, and uncertainty quantification for model credibility; the clarity of model descriptions and annotations for understandability; adherence to standards and open science practices for reproducibility; and the use of open standards and modular code for extensibility and reuse. We outline recommended and baseline requirements for each aspect of CURE, aiming to enhance the impact and trustworthiness of computational models, particularly in biomedical applications where credibility is paramount. Our perspective underscores the need for a more disciplined approach to modeling, aligning with emerging trends such as Digital Twins and emphasizing the importance of data and modeling standards for interoperability and reuse. Finally, we emphasize that given the non-trivial effort required to implement the guidelines, the community should strive to automate as many of the guidelines as possible.

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Cite This Study

Sauro et al. (2026) studied this question.

synapsesocial.com/papers/69c8c371de0f0f753b39e4a0https://doi.org/10.1038/s41540-026-00651-0
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