MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

Marcela Uliano‐Silva; João Gabriel R. N. Ferreira; Ksenia Krasheninnikova; Mark Blaxter; Nova Mieszkowska; Neil Hall; Peter W. H. Holland; Richard Durbin; Thomas A. Richards; Paul Kersey; Peter M. Hollingsworth; Willie Wilson; Alex D. Twyford; Ester Gaya; Mara Lawniczak; Owen Lewis; Gavin R. Broad; Fergal J. Martin; Michelle Hart; Ian Barnes; Giulio Formenti; Linelle Abueg; James Torrance; Eugene W. Myers; Richard Durbin; Mark Blaxter; Shane McCarthy

doi:10.1186/s12859-023-05385-y

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Abstract

MitoHiFi is able to assemble mitochondrial genomes from a wide phylogenetic range of taxa from Pacbio HiFi data. MitoHiFi is written in python and is freely available on GitHub ( https://github.com/marcelauliano/MitoHiFi ). MitoHiFi is available with its dependencies as a Docker container on GitHub (ghcr.io/marcelauliano/mitohifi:master).

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Uliano‐Silva et al. (2023) studied this question.

synapsesocial.com/papers/69d6a9d741375cf86eed8789 https://doi.org/10.1186/s12859-023-05385-y

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MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

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