BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

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Abstract

BMGE is able to perform biologically relevant trimming on a multiple alignment of DNA, codon or amino acid sequences. Java source code and executable are freely available at ftp://ftp.pasteur.fr/pub/GenSoft/projects/BMGE/.

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Alexis Criscuolo

Institut Pasteur

Simonetta Gribaldo

Institut Pasteur

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BMC Evolutionary Biology

SHILAP Revista de lepidopterología

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Institut Pasteur

Biology of Extremophiles Laboratory

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Criscuolo et al. (Fri,) studied this question.

synapsesocial.com/papers/69d727c63f906f6a06bef75c — DOI: https://doi.org/10.1186/1471-2148-10-210

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Comparison of Undirected Phylogenetic Trees Based on Subtrees of Four Evolutionary Units· 1985 · 264 citations
An Assessment of Accuracy, Error, and Conflict with Support Values from Genome-Scale Phylogenetic Data· 2004 · 7 citations

Also consider

Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context:

Samples from Two Bivariate Normal Populations· 1941 · 2 citations
Bayesian Estimation of Concordance Among Gene Trees· 2007 · 42 citations
Sequence logos: a new way to display consensus sequences· 1990 · 3,459 citations
Comparison of Undirected Phylogenetic Trees Based on Subtrees of Four Evolutionary Units· 1985 · 264 citations
An Assessment of Accuracy, Error, and Conflict with Support Values from Genome-Scale Phylogenetic Data· 2004 · 7 citations

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

Key Points

Abstract

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Discussion

Authors

Journals

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Institutions

References and Citations

Citation Network

Connected Papers

Discussion

Cite this study

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