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January 14, 2008BMC Bioinformatics1,814 citationsOpen Access

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

DEDavid EllinghausSKStefan KurtzUWUte Willhoeft

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Abstract

LTRharvest is an efficient software tool delivering high quality annotation of LTR retrotransposons. It can, for example, process the largest human chromosome in approx. 8 minutes on a Linux PC with 4 GB of memory. Its flexibility and small space and run-time requirements makes LTRharvest a very competitive candidate for future LTR retrotransposon annotation projects. Moreover, the structured design and implementation and the availability as open source provides an excellent base for incorporating novel concepts to further improve prediction of LTR retrotransposons.

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Cite This Study

Ellinghaus et al. (2008) studied this question.

synapsesocial.com/papers/69d76666d55abd294a48f446https://doi.org/10.1186/1471-2105-9-18
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