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Demonstrates automated resistance prediction and lineage classification in Mycobacterium tuberculosis, suggesting improved diagnostics.
The Mycobacteria Amplicon Sequencing Tool ( https://github.com/guthrielab/MAST ) is a modular Nextflow pipeline for antimicrobial resistance prediction and lineage classification of Mycobacterium tuberculosis from amplicon or whole-genome sequencing data sets. The workflow automates read processing, variant calling, and annotation to produce standardized, human-readable reports in DOCX and TSV format.
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Olawoye et al. (2026) studied this question.
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