Spatial Patterns and Ecological Drivers of Sedimentary Eukaryotic Microorganisms Across Typical Depositional Zones of Lake Taihu

Although sedimentary zones in Lake Taihu differ in external inputs, hydrodynamic conditions, and sedimentary settings, the spatial differentiation of eukaryotic microbial communities and their assembly mechanisms remain insufficiently understood. This study analyzed sediment cores from four typical sedimentary zones of Lake Taihu: Dapu (DP), Gonghu (GH), the central lake area (HX), and Xuhu (XH). By integrating physicochemical measurements, 18S rRNA gene high-throughput sequencing, redundancy analysis, functional annotation, iCAMP, and co-occurrence network analysis, we characterized the composition, environmental associations, and assembly mechanisms of sedimentary eukaryotic microbial communities. The results showed that eukaryotic microbial communities in Lake Taihu sediments exhibited marked spatial heterogeneity, with dominant taxonomic groups including Chlorophyta, Intramacronucleata, and Diatomea. Alpha diversity was higher in the GH zone and lower in the HX zone, whereas beta diversity showed significant separation among lake zones. NH4+-N, NO3−-N, TN, TP, TOC, D50, MWC, and pH were associated with variation in community composition, but the main associated factors differed among zones. FunGuild annotation showed that annotated fungal functional groups exhibited distinct trophic distribution patterns across sedimentary zones. iCAMP analysis indicated that community assembly was generally dominated by stochastic processes, with dispersal limitation prevailing in the GH zone and ecological drift dominating in the DP, HX, and XH zones. Co-occurrence network analysis further revealed marked differentiation in potential biological associations among sedimentary zones. Overall, this study showed that nutrient conditions and sediment physical properties in different sedimentary environments of Lake Taihu jointly shaped the spatial patterns of eukaryotic microbial communities and their ecological associations, providing baseline information for understanding sedimentary ecological processes in eutrophic shallow lakes.