Retention of the Full Visual Opsin Repertoire in Some Australian Cryptozoic Lizards

Australian scincid lizards in the sister genera Lerista and Ctenotus are a prominent system for understanding adaptation in the transition from surface‐active to fossorial life. The approximately 205 species in this group exhibit extreme diversity in morphology and ecology. Lerista and Ctenotus both include diurnal and surface‐active species that are fully pentadactyl, and Lerista also contains many specialised limb‐reduced and limbless sand‐swimmers. To understand how the visual systems of these lizards have responded to their varied photic environments, we examined the five opsin genes encoding the pigments that mediate colour and dim‐light vision. These genes were sequenced for 58 species of Lerista and Ctenotus and analysed for variation in selection pressures among amino acid sites and across branches in the species tree. All five opsins are inferred to be present and intact in all species of Lerista and Ctenotus examined, and we identified signals of differential selection in all five opsin genes—RH1, which mediates scotopic vision and four cone opsins associated with photopic vision (SWS1, SWS2, RH2, LWS). Most comparisons of selection pressures did not show significant differences across broad ecological divisions; however, LWS showed signals of both positive site‐specific and relaxed selection in comparisons of the more limb reduced versus less fossorial (fully limbed) Lerista . These results suggest that photopic abilities are retained across both clades, even in the most fossorial species, highlighting a need for studies of visual ecology of Australian skinks and prompting caution with regards to generalisations about degenerate vision in fossorial squamates.