Community Composition, Assembly Processes and Stability of Microeukaryotic Plankton in Response to Damming-Altered Heterogeneous Hydrology in a Sediment-Laden River

Suspended particulate matter (SPM) is a key environmental driver in aquatic ecosystems and plays a significant role in shaping microbial communities, particularly in sediment-rich rivers. Dam construction alters hydrological regimes and creates distinct SPM gradients; however, the response mechanisms of microeukaryotic plankton communities remain poorly understood. In this study, we used 18S rRNA gene high-throughput sequencing to characterize microeukaryotic plankton communities across riverine, lacustrine, and transitional zones of the Xiaolangdi Reservoir on the Yellow River (China). Our results revealed distinct community compositions in the lacustrine zone, with SPM identified as the primary factor driving community differentiation. Alpha diversity was highest in the riverine zone, while beta diversity differences among zones were dominated by species turnover. Dominant taxa included Cryptophyta (44.71% ± 30.79%), Metazoa (18.98% ± 17.71%), Perkinsea (7.97% ± 9.78%), Chlorophyta (7.06% ± 5.80%), and Dinophyta (6.06% ± 6.73%). Metazoa, Dinophyta, and Phaeophyta were enriched in high-SPM riverine waters, whereas Alveolata dominated low-SPM lacustrine zones. Community assembly was primarily deterministic, governed mainly by homogeneous selection, with stochastic processes exerting stronger influence in riverine zones. Network analysis indicated that riverine zones exhibited more complex and stable networks, lacustrine zones showed higher local but lower global connectivity, and transitional zones displayed stronger interactions but lower stability. These findings advance our understanding of microeukaryotic plankton responses to dam-induced environmental changes and provide a basis for assessing biodiversity impacts in regulated river systems.