When Fungi Meet Bacteria: Cross-Kingdom Assembly and Bioremediation Potential Under PAH Stress

Polycyclic aromatic hydrocarbons (PAHs) are persistent and toxic pollutants that accumulate in urban soils, reducing microbial diversity and compromising ecosystem functioning. Developing effective bioremediation strategies requires identifying native degraders and understanding their ecological dynamics under pollutant pressure. Here, we investigated fungal and bacterial communities from PAH-contaminated soil subjected to three consecutive enrichment steps using phenanthrene, fluoranthene, benzo(a)pyrene, benzo(g,h,i)perylene, and their mixture as the sole carbon sources. High-throughput sequencing of ITS2 and V3-V4 amplicons revealed a decline in alpha diversity and a strong restructuring of both communities during the enrichment. Distance-based redundancy analysis showed that contaminant type and enrichment progression jointly shaped community composition, selecting for stress-tolerant taxa. Culturomics yielded 102 fungal isolates, representing 19 taxa, predominantly within Ascomycota. The most represented taxa were Galactomyces pseudocandidus (19 strains), Fusarium oxysporum (five), Stilbella aciculosa and Exophiala attenuata (four each) and Fusarium solani (three). Approximately one-third of isolates harbored associated bacteria, mainly Stenotrophomonas, Bosea and Chitinophaga species. Functional assays identified biosurfactant-producing strains, while microplate screening highlighted Fusarium solani, Galactomyces pseudocandidus and Trametes versicolor as capable of growing under PAH-selective conditions. Overall, our results demonstrate that PAH-contaminated soils host fungal taxa able to persist under pollutant pressure together with recurrent fungi-associated bacteria of potential ecological relevance for bioremediation.