From Hive Sensors to Environmental DNA: Toward a Systems Biology Framework for Honeybee-Based Early Warning of Colony and Ecosystem Health

Honeybees (Apis mellifera) serve as biological sentinels because their foraging behavior links colony health to environmental conditions. Traditional hive inspections are invasive, observer-dependent, and often detect problems only after symptoms appear. This review synthesizes advances in precision beekeeping, environmental DNA (eDNA) metabarcoding, exposomics, and artificial intelligence to propose the Honeybee-Based Early Warning System (H-BEWS), a unified framework that integrates digital sensors, molecular and chemical monitoring, and ecological data into a predictive early warning system for both colony and ecosystem health. By linking anomalies detected by hive sensors to targeted molecular and chemical analyses, H-BEWS enables proactive interventions and environmental surveillance, supporting a One Health perspective. Unlike previous reviews that focus on individual technologies, H-BEWS emphasizes multi-layered integration, predictive risk assessment, and ecosystem-level insights, providing a novel conceptual framework for early detection of colony stress and environmental hazards. The approach offers practical applications for beekeepers, researchers, and policymakers by converting real-time data into actionable insights and informing management decisions. Challenges include sensor standardization, data integration, AI validation, and equitable access for small-scale beekeepers. Future directions will focus on real-time sequencing, multimodal AI models, digital twin creation, and the development of global surveillance networks. H-BEWS demonstrates how an integrative, multi-layered approach can transform honeybee colonies into living biosensors, providing actionable insights for both apiculture management and ecosystem monitoring.