What question did this study set out to answer?

The aim is to provide a practical guide to methods and concepts in phylogenetic analysis and hypothesis testing.

January 1, 2009

The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing

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Comprehensive handbook guides phylogenetic analysis, data preparation, and hypothesis testing in molecular evolution.

The aim is to provide a practical guide to methods and concepts in phylogenetic analysis and hypothesis testing.
Covers basic concepts of molecular evolution and data preparation techniques.
Discusses various phylogenetic inference methods including maximum likelihood, Bayesian analysis, and more.
Explores model selection, molecular adaptation, and recombination detection.
Integrates multiple methodologies for phylogenetic analysis, enhancing understanding of molecular evolution.
Illustrates the application of computational tools in testing evolutionary hypotheses and models.

Lemey et al. (2009) studied this question.

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