Screening for atypical porcine pestivirus in Swedish boar semen used for artificial insemination and a characterisation of the seminal RNA microbiome including the virome

Figures

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  Fig. 1. Stacked bar chart showing the number of reads from the eight most abundant viral species. Reads classified as Equine infectious anemia virus were removed from the dataset for clarity. Atypical Porcine Pestivirus generated 16 reads in pool number 4

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  Fig. 2. Maximum likelihood tree of Posavirus-1. Tree is midpoint rooted for clarity only, scale bar corresponds to the number of nucleotide sequences per site and aBayes branch support values are provided at nodes. Coloured boxes indicate continent of virus detection. Viral contigs recovered here are denoted in bold

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  Fig. 3. Maximum likelihood tree of Atypical Porcine Pestivirus. Cluster number as defined by Gatto et al., [35]. Tree is rooted against Cluster V viruses, as per Gatto et al., [35]. Scale bar corresponds to the number of nucleotide sequences per site and aBayes branch support values are provided at nodes. Coloured boxes indicate continent of virus detection. Viral contigs recovered here are denoted in bold

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  Fig. 4. Stacked bar chart showing the number of reads from the ten most abundant phage species

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  Fig. 5. Stacked bar chart showing the number of reads from the eight most abundant bacterial species

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  Fig. 6. Stacked bar chart showing the number of contigs from the eight most abundant bacterial species

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  Fig. 7. Stacked bar chart showing the number of reads from the eight most abundant fungal species