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August 28, 2026npj VirusesOpen Access

Composition of plant-associated RNA virus communities in two Brazilian regions with different levels of human intervention

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Authors

AQAyane F. F. QuadrosTBTarsiane M. C. BarbosaTMTúlio Morgan

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Overview

Geometagenomic analysis reveals higher plant RNA virus diversity in undisturbed ecosystems compared to human-altered landscapes, highlighting natural habitats as vast reservoirs of unclassified...

Key Points

  • Characterize and compare plant-associated RNA virus communities between natural ecosystems with low human disturbance and areas altered by human intervention.
  • Sampled wild and cultivated plants across two ecosystems with varying degrees of human interference and their interface zones in Minas Gerais, Brazil.
  • Extracted double-stranded RNA (dsRNA) and performed sequencing on an Oxford Nanopore MinION platform.
  • Identified and classified viral reads using bioinformatics pipelines, including BLAST, PalmScan, profile HMMs, and geNomad.
  • Ecosystems subjected to lower levels of human intervention exhibited higher overall plant and viral diversity.
  • Samples from the less-disturbed ecosystem contained a substantially higher proportion of novel, unclassified RNA viruses compared to heavily altered environments.

Cite This Study

Quadros et al. (2026) studied this question.

synapsesocial.com/papers/6a91466cd15324a1df3a9f36https://doi.org/10.1038/s44298-026-00231-3
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