Answers are grounded in this paper and cite their sources.
MOTIVATION: RUbioSeq has been developed to facilitate the primary and secondary analysis of re-sequencing projects by providing an integrated software suite of parallelized pipelines to detect exome variants (single-nucleotide variants and copy number variations) and to perform bisulfite-seq analyses automatically. RUbioSeq's variant analysis results have been already validated and published. AVAILABILITY: http://rubioseq.sourceforge.net/.
No takes yet. Share an insight, caveat, or question.
Rubio-Camarillo et al. (2013) studied this question.
Synapse has enriched 10 related papers. Consider them for comparative context: