The prevalence and genomic characteristics of hepatitis E virus in murine rodents and house shrews from several regions in China

Figures

• 

  Fig. 1. Location of the trapping sites of the murine rodents and house shrews in China. Number of animals trapped are indicated in brackets. Map source: http://image.so.com/v?src=360pic_normal&z=1&i=0&cmg=9923e970972c38717e105d62081f0181&q=%E4%B8%AD%E5%9B%BD%E5%9C%B0%E5%9B%BE&correct=%E4%B8%AD%E5%9B%BD%E5%9C%B0%E5%9B%BE&cmsid=4372c66d63a3bc1a0c3a77413cee395a&cmran=0&cmras=0&cn=0&gn=0&kn=11#multiple=0&gsrc=1&dataindex=44&id=8c7daffc8205d4592f8e4a6e8c0e25e2&currsn=0&jdx=44&fsn=71

• 

  Fig. 2. Phylogenetic tree constructed based on partial nucleotide sequences of partial ORF1 regions (255-nt) of 19 HEV strains (MrBayes, GTR + G + I nucleotide substitution model). Twenty five representative HEV isolates derived from rats, swine, humans, rabbits, wild boars, bat, and ferret are included for comparison. Percentages of the posterior probability (PP) values are indicated

• 

  Fig. 3. Phylogenetic tree constructed based on partial nucleotide sequences of partial ORF1–ORF2 regions (769-nt) of 23 HEV isolates (MrBayes, GTR + G + I nucleotide substitution model). Five rat HEV isolates and 20 HEV isolates derived from swine, humans, rabbits, wild boars, bat, and ferret are included for comparison. Percentages of the PP values are indicated

• 

  Fig. 4. Phylogenetic tree constructed based on near full-length genomes of HEV (MrBayes, GTR + G + I nucleotide substitution model). Three rat HEV isolates and 22 HEV isolates derived from swine, humans, rabbits, wild boars, bat, and ferret are included for comparison. Percentages of the PP values are indicated

• 

  Fig. 5. Phylogenetic tree constructed based on partial ORF1 of the near full-length genomes of HEV (MrBayes, GTR + G + I nucleotide substitution model). Three rat HEV isolates and 22 HEV isolates derived from swine, humans, rabbits, wild boars, bat, and ferret are included for comparison. Percentages of the PP values are indicated

• 

  Fig. 6. Phylogenetic tree constructed based on partial ORF4 of the near full-length genomes of HEV (MrBayes, GTR + G + I nucleotide substitution model). Three rat HEV isolates and seven HEV isolates derived from rats and ferret are included for comparison. Percentages of the PP values are indicated

• 

  Fig. 7. Phylogenetic tree constructed based on partial ORF2 of the near full-length genomes of HEV (MrBayes, GTR + G + I nucleotide substitution model). Three rat HEV isolates and 22 HEV isolates derived from swine, humans, rabbits, wild boars, bat, and ferret are included for comparison. Percentages of the PP values are indicated

• 

  Fig. 8. Phylogenetic tree constructed based on ORF3 of the near full-length genomes of HEV (MrBayes, GTR + G + I nucleotide substitution model). Three rat HEV isolates and 22 HEV isolates derived from swine, humans, rabbits, wild boars, bat, and ferret are included for comparison. Percentages of the PP values are indicated

• 

  Fig. 9. The identity of the different regions of the amino acid sequences (XM11, GZ95, and GZ481), based on rat HEV (GenBank accession no. GU345042)