Discovery of d -Miniprotein Inhibitors of PD-1/PD-L1 Interaction via Mirror-Image Phage Display against Synthetic d -PD-1

High Resolution Image Download MS PowerPoint Slide As a member of the immune checkpoint, PD-1 is acknowledged as a key player in immune regulation and a hot target for cancer immunotherapy. The broad and flat binding interface of PD-1 to PD-L1 poses a challenge to non-antibody inhibitor discovery. In this work, through mirror-image phage display, we developed the first d -miniprotein inhibitor of PD-1/PD-L1 interaction, D PDI-49, with nanomolar affinity to PD-1 and single-digit micromolar EC 50 in a cell-based inhibition assay. The binding mode between D PDI-49 and PD-1 was studied by NMR and MD simulations. For comparison, we screened several commercial and in-house short peptide libraries against synthetic d -PD-1. The failure in identifying a hit structure with inhibition activity using those libraries underpins the superiority of the well-folded miniprotein library in PPI inhibitor development for challenging protein targets.