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Papers by Peer Bork

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1. In-cell discovery and characterization of a non-canonical bacterial protein translocation-folding complexCell · 2026
2. Multidisciplinary Delphi consensus statement on minimal standards for clinical metadata and end points in microbiome studiesNature Reviews Gastroenterology & Hepatology · 2026
3. Diet and microbiome shape small-molecule cytokinin pools in mammalsGut Microbes · 2026
4. Variations in the latitudinal diversity gradients of the ocean microbiomeCell Host & Microbe · 2026
5. Prominent mediatory role of gut microbiome in the effect of lifestyle on host metabolic phenotypesSocio-Environmental Systems Modeling · 2025
6. VIRE: a metagenome-derived, planetary-scale virome resource with environmental contextNucleic Acids Research · 2025
7. proGenomes4: providing 2 million accurately and consistently annotated high-quality prokaryotic genomesNucleic Acids Research · 2025
8. eggNOG v7: phylogeny-based orthology predictions and functional annotationsNucleic Acids Research · 2025
9. Metalog: curated and harmonised contextual data for global metagenomics samplesNucleic Acids Research · 2025
10. Lactococcus A phages predict ACLF while Enterococcus B phages predict bacterial infection in decompensated cirrhosisJHEP Reports · 2025
11. SMART v10: three decades of the protein domain annotation resourceNucleic Acids Research · 2025
12. A gut microbiome-kidney-heart axis predictive of future cardiovascular diseases.2025
13. Metalog: curated and harmonised contextual data for global metagenomics samples2025
14. The JEDI marker as a universal measure of planetary biodiversity2025
15. Planetary microbiome structure and generalist-driven gene flow across disparate habitats2025
16. Alcohol-related liver disease disrupts bile acid synthesis and is associated with compensatory gut microbiota changes2025
17. Nuclear rerouting of paracrine Fgf3 in source cells represses target genes to pattern morphogen responses2025
18. The postbiotic ReFerm® versus standard nutritional support in advanced alcohol-related liver disease (GALA-POSTBIO): a randomized controlled phase 2 trialNature Communications · 2025
19. Hidden but discoverable diversity in the global microbiome2025
20. In-cell discovery and characterization of a non-canonical bacterial protein translocation-folding complex2025
21. Uncovering nitroxoline activity spectrum, mode of action and resistance across Gram-negative bacteriaNature Communications · 2025
22. A conserved pilin from uncultured gut bacterial clade TANB77 enhances cancer immunotherapyNature Communications · 2024
23. Microbiome testing in Europe: navigating analytical, ethical and regulatory challengesMicrobiome · 2024
24. Systematic mapping of antibiotic cross-resistance and collateral sensitivity with chemical geneticsNature Microbiology · 2024
25. Multi-biome analysis identifies distinct gut microbial signatures and their crosstalk in ulcerative colitis and Crohn’s diseaseNature Communications · 2024
26. InterPro: the protein sequence classification resource in 2025Nucleic Acids Research · 2024
27. The STRING database in 2025: protein networks with directionality of regulationNucleic Acids Research · 2024
28. Fecal microbial load is a major determinant of gut microbiome variation and a confounder for disease associationsCell · 2024
29. Emergence of community behaviors in the gut microbiota upon drug treatmentCell · 2024
30. State of the art and the future of microbiome-based biomarkers: a multidisciplinary Delphi consensusThe Lancet Microbe · 2024
31. A catalog of small proteins from the global microbiomeNature Communications · 2024
32. Long-read sequencing reveals extensive gut phageome structural variations driven by genetic exchange with bacterial hostsScience Advances · 2024
33. Refined Enterotyping Reveals Dysbiosis in Global Fecal Metagenomes2024
34. Bifidobacterium and Lactobacillus Probiotics and Gut Dysbiosis in Preterm InfantsJAMA Pediatrics · 2024
35. Discovery of antimicrobial peptides in the global microbiome with machine learningCell · 2024
36. Uncovering nitroxoline activity spectrum, mode of action and resistance across Gram-negative bacteria2024
37. The diversity of the microbiome impacts chronic lymphocytic leukemia development in mice and humansHaematologica · 2024
38. Paternal microbiome perturbations impact offspring fitnessNature · 2024
39. Emergent survival and extinction of species within gut bacterial communities2024
40. Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation toolNucleic Acids Research · 2024
41. Opportunities and barriers in omics-based biomarker discovery for steatotic liver diseasesJournal of Hepatology · 2024
42. Fecal microbial load is a major determinant of gut microbiome variation and a confounder for disease associations2024
43. Terlipressin therapy is associated with increased risk of colonisation with multidrug‐resistant bacteria in patients with decompensated cirrhosisAlimentary Pharmacology & Therapeutics · 2024
44. Systematic mapping of antibiotic cross-resistance and collateral sensitivity with chemical genetics2024
45. Infections increase the risk of decompensation and death in patients with early alcohol-related liver diseaseJHEP Reports · 2024
46. Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐ and Long‐Read SequencingAdvanced Science · 2024
47. The Gut Microbiome Strongly Mediates the impact of Lifestyle combined variables on Cardiometabolic Phenotypes2024
48. A catalogue of small proteins from the global microbiome2023
49. Functional and evolutionary significance of unknown genes from uncultivated taxaNature · 2023
50. SPIRE: a Searchable, Planetary-scale mIcrobiome REsourceNucleic Acids Research · 2023