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Papers by Peer Bork

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51. Evidence of a causal and modifiable relationship between kidney function and circulating trimethylamine N-oxideSocio-Environmental Systems Modeling · 2023
52. C. difficile may be overdiagnosed in adults and is a prevalent commensal in infants2023
53. C. difficile may be overdiagnosed in adults and is a prevalent commensal in infants2023
54. Computational exploration of the global microbiome for antibiotic discovery2023
55. NFDI4Microbiota – national research data infrastructure for microbiota researchResearch Ideas and Outcomes · 2023
56. Ocean-wide comparisons of mesopelagic planktonic community structuresISME Communications · 2023
57. Enterotypes of the human gut mycobiomeSHILAP Revista de lepidopterología · 2023
58. Consistency across multi‐omics layers in a drug‐perturbed gut microbial communitySHILAP Revista de lepidopterología · 2023
59. Long‐Read Sequencing Reveals Extensive DNA Methylations in Human Gut Phagenome Contributed by Prevalently Phage‐Encoded MethyltransferasesAdvanced Science · 2023
60. Emergence of community behaviors in the gut microbiota upon drug treatment2023
61. Long-read sequencing reveals extensive DNA methylations in human gut phagenome contributed by prevalently phage-encoded methyltransferases2023
62. Microbially Produced Imidazole Propionate Is Associated With Heart Failure and MortalityJACC Heart Failure · 2023
63. Rifaximin-α for liver fibrosis in patients with alcohol-related liver disease (GALA-RIF): a randomised, double-blind, placebo-controlled, phase 2 trial˜The œLancet. Gastroenterology & hepatology · 2023
64. Sphingolipids Are Depleted in Alcohol-Related Liver FibrosisGastroenterology · 2023
65. Enterotypes of the human gut mycobiome2023
66. Alterations of oral microbiota and impact on the gut microbiome in type 1 diabetes mellitus revealed by integrated multi-omic analysesMicrobiome · 2022
67. Enterotypes of the human gut mycobiome2022
68. Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environmentsSHILAP Revista de lepidopterología · 2022
69. proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomesNucleic Acids Research · 2022
70. eggNOG 6.0: enabling comparative genomics across 12 535 organismsNucleic Acids Research · 2022
71. The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interestNucleic Acids Research · 2022
72. InterPro in 2022Nucleic Acids Research · 2022
73. Evidence of a causal and modifiable relationship between kidney function and circulating trimethylamine N -oxide with implications for heart and kidney disorders2022
74. Visualizing translation dynamics at atomic detail inside a bacterial cellNature · 2022
75. Drivers and determinants of strain dynamics following fecal microbiota transplantationTyöväentutkimus Vuosikirja · 2022
76. Multiomics and quantitative modelling disentangle diet, host, and microbiota contributions to the host metabolome2022
77. Efficient recovery of complete gut phage genomes by combined short- and long-sequencing2022
78. Priorities for ocean microbiome researchNature Microbiology · 2022
79. Biosynthetic potential of the global ocean microbiomeSocio-Environmental Systems Modeling · 2022
80. Genomic evidence for global ocean plankton biogeography shaped by large-scale current systemseLife · 2022
81. The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genesNucleic Acids Research · 2022
82. Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit oceanCell Genomics · 2022
83. Metagenomic Identification of Microbial Signatures Predicting Pancreatic Cancer From a Multinational StudyGastroenterology · 2022
84. Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA viromeScience · 2022
85. Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomesNucleic Acids Research · 2022
86. A faecal microbiota signature with high specificity for pancreatic cancerGut · 2022
87. C. difficile may be overdiagnosed in adults and is a prevalent commensal in infants2022
88. Alterations of oral microbiota and impact on the gut microbiome in type 1 diabetes mellitus revealed by multi-omic analysis2022
89. Microbiome and metabolome features of the cardiometabolic disease spectrumSocio-Environmental Systems Modeling · 2022
90. Functional and evolutionary significance of unknown genes from uncultivated taxa2022
91. Meconium Microbiome of Very Preterm Infants across GermanymSphere · 2022
92. Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolismGut · 2022
93. Enrichment of gut microbiome strains for cultivation-free genome sequencing using droplet microfluidicsCell Reports Methods · 2021
94. Visualizing translation dynamics at atomic detail inside a bacterial cell2021
95. Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic OceanNature Microbiology · 2021
96. Profiling cellular diversity in sponges informs animal cell type and nervous system evolutionScience · 2021
97. A Previously Undescribed Highly Prevalent Phage Identified in a Danish Enteric Virome CatalogmSystems · 2021
98. eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic ScaleMolecular Biology and Evolution · 2021
99. Drivers and Determinants of Strain Dynamics Following Faecal Microbiota Transplantation2021
100. Protein Intake, Metabolic Status and the Gut Microbiota in Different Ethnicities: Results from Two Independent CohortsNutrients · 2021