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Papers by Peer Bork

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151. Minimum Information about an Uncultivated Virus Genome (MIUViG)Nature Biotechnology · 2018
152. STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasetsNucleic Acids Research · 2018
153. eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 virusesNucleic Acids Research · 2018
154. InterPro in 2019: improving coverage, classification and access to protein sequence annotationsNucleic Acids Research · 2018
155. Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional declineNature Communications · 2018
156. Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiotaGut · 2018
157. Newly designed 16S rRNA metabarcoding primers amplify diverse and novel archaeal taxa from the environmentEnvironmental Microbiology Reports · 2018
158. NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language2018
159. Copy number variation analysis and targeted NGS in 77 families with suspected Lynch syndrome reveals novel potential causative genesInternational Journal of Cancer · 2018
160. Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut MicrobiomeCell Host & Microbe · 2018
161. Metagenomic analysis of gut microbial communities from a Central Asian populationBMJ Open · 2018
162. The gut microbiome is associated with behavioural task in honey beesInsectes Sociaux · 2018
163. Pervasive Protein Thermal Stability Variation during the Cell CycleCell · 2018
164. Similarity of the dog and human gut microbiomes in gene content and response to dietMicrobiome · 2018
165. iPath3.0: interactive pathways explorer v3Nucleic Acids Research · 2018
166. Selective maternal seeding and environment shape the human gut microbiomeTyöväentutkimus Vuosikirja · 2018
167. Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic ResistanceCell · 2018
168. Rapid proteotyping reveals cancer biology and drug response determinants in the NCI-60 cells2018
169. A global ocean atlas of eukaryotic genesNature Communications · 2018
170. Subspecies in the global human gut microbiomeMolecular Systems Biology · 2017
171. Gut microbiota composition is associated with environmental landscape in honey beesEcology and Evolution · 2017
172. The microbiomes of blowflies and houseflies as bacterial transmission reservoirsScientific Reports · 2017
173. MVP: a microbe–phage interaction databaseNucleic Acids Research · 2017
174. Pole-to-Pole Connections: Similarities between Arctic and Antarctic Microbiomes and Their Vulnerability to Environmental ChangeSHILAP Revista de lepidopterología · 2017
175. Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryoteseLife · 2017
176. 20 years of the SMART protein domain annotation resourceNucleic Acids Research · 2017
177. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaeaNature Biotechnology · 2017
178. metaSNV: A tool for metagenomic strain level analysisPLoS ONE · 2017
179. Capturing protein communities by structural proteomics in a thermophilic eukaryoteMolecular Systems Biology · 2017
180. Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-MapperMolecular Biology and Evolution · 2017
181. Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson’s disease patientsGenome Medicine · 2017
182. RTK: efficient rarefaction analysis of large datasetsBioinformatics · 2017
183. Systematic identification of phosphorylation-mediated protein interaction switchesPLoS Computational Biology · 2017
184. GEAR: A database of Genomic Elements Associated with drug ResistanceScientific Reports · 2017
185. Gut microbiota differs between children with Inflammatory Bowel Disease and healthy siblings in taxonomic and functional composition: a metagenomic analysisAJP Gastrointestinal and Liver Physiology · 2016
186. The endosomal transcriptional regulator RNF11 integrates degradation and transport of EGFRThe Journal of Cell Biology · 2016
187. InterPro in 2017—beyond protein family and domain annotationsNucleic Acids Research · 2016
188. OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell linesNucleic Acids Research · 2016
189. proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomesNucleic Acids Research · 2016
190. The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessibleNucleic Acids Research · 2016
191. Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper2016
192. CART—a chemical annotation retrieval toolkitBioinformatics · 2016
193. Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun SequencingPLoS ONE · 2016
194. Global genetic capacity for mixotrophy in marine picocyanobacteriaThe ISME Journal · 2016
195. Durable coexistence of donor and recipient strains after fecal microbiota transplantationScience · 2016
196. Energy efficiency trade-offs drive nucleotide usage in transcribed regionsNature Communications · 2016
197. Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other treesNucleic Acids Research · 2016
198. MOCAT2: a metagenomic assembly, annotation and profiling frameworkBioinformatics · 2016
199. Standardized benchmarking in the quest for orthologsNature Methods · 2016
200. Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplanktonNature Communications · 2016